Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| HNSC | rs111260157 | chr12:120916642 | C/G | 6.92E-5 | 404 | 16.2 | 19.48 | 7.38 | KM Plot |
| HNSC | rs111363705 | chr20:44465085 | G/A | 4.65E-7 | 407 | 16.43 | 14.98 | 9.13 | KM Plot |
| HNSC | rs111581278 | chr20:44450275 | C/T | 5.37E-7 | 410 | 16.33 | 15.87 | 9.13 | KM Plot |
| HNSC | rs111842109 | chr20:44423185 | T/C | 5.83E-7 | 407 | 16.33 | 14.67 | 9.13 | KM Plot |
| HNSC | rs11201316 | chr10:81797158 | C/T | 4.34E-5 | 400 | 16.33 | 15.97 | 1.92 | KM Plot |
| HNSC | rs11209653 | chr1:71083243 | G/T | 4.44E-7 | 412 | 4.75 | 14.95 | 16.68 | KM Plot |
| HNSC | rs112175284 | chr4:15814089 | G/C | 4.05E-5 | 409 | 17.4 | 14.4 | 11.2 | KM Plot |
| HNSC | rs112244940 | chr20:44443634 | G/A | 5.0E-7 | 409 | 16.33 | 15.3 | 9.13 | KM Plot |
| HNSC | rs112335639 | chr20:44464863 | G/C | 3.51E-7 | 407 | 16.68 | 13.35 | 9.13 | KM Plot |
| HNSC | rs112828575 | chr20:44436370 | G/C | 5.56E-7 | 409 | 16.35 | 14.98 | 9.13 | KM Plot |
| HNSC | rs11291018 | chr16:72029183 | AC/A | 1.99E-5 | 396 | 17.25 | 16.37 | 12.03 | KM Plot |
| HNSC | rs113014929 | chr12:120921088 | C/G | 6.92E-5 | 404 | 16.2 | 19.48 | 7.38 | KM Plot |
| HNSC | rs113078241 | chr18:42805154 | C/T | 2.75E-5 | 409 | 16.92 | 13.05 | 4.3 | KM Plot |
| HNSC | rs113111812 | chr6:74341192 | AT/A | 5.81E-5 | 411 | 17.13 | 13.12 | 10.3 | KM Plot |
| HNSC | rs113156784 | chr16:74332052 | T/C | 4.93E-6 | 401 | 16.5 | 14.53 | 5.33 | KM Plot |